Multi-mode movement decisions across widely ranging behavioral processes

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dc.contributor.author Prima, Marie-Caroline
dc.contributor.author Duchesne, Thierry
dc.contributor.author Merkle, Jerod A.
dc.contributor.author Jammes, Simon Chamaille
dc.contributor.author Chamaillé-Jammes, Simon
dc.contributor.author Fortin, Daniel
dc.date.accessioned 2022-11-07T10:12:30Z
dc.date.available 2022-11-07T10:12:30Z
dc.date.issued 2022-08-11
dc.description DATA AVAILABILITY STATEMENT : The data are available at: https://osf.io/v5pnc/ en_US
dc.description SUPPLEMENTARY MATERIAL : S1 Appendix. Calculation of average travelled distance using coefficient estimates associated to step length. https://doi.org/10.1371/journal.pone.0272538.s001 en_US
dc.description S1 Table. Values and definition [from c] of model parameters used to simulate multi-state correlated random walks in three scenarios of landscape patchiness. https://doi.org/10.1371/journal.pone.0272538.s002 en_US
dc.description S2 Table. Coefficient estimates along with their 95% confidence interval (95% CI) of the mixed-effects generalized linear model with binomial distribution (HMM-SSF + GLMM) and the multi-state correlated random walk model (HMM-CRW) to predict probability of switching from encamped to travelling mode, in 500 simulated foragers moving among resource patches and avoiding a predator. In resource patch is a dummy variable indicating whether the forager is within a resource patch (i.e., patch quality >0), equals the actual distance of the predator from the forager (dPredator) when dPredator ≤ 0.8 km and 0.8 km, otherwise. log(dPredator) is the natural logarithm of dPredator. https://doi.org/10.1371/journal.pone.0272538.s003 en_US
dc.description S3 Table. Coefficient estimates along with their 95% confidence interval (95% CI) of mixed-effects generalized linear models with binomial distribution to predict probability of switching from encamped to travelling mode of movement, in plains bison during summer in Prince Albert National Park (SK, Canada). Each table represents estimates for a specific threshold probability (Pthreshold) used to categorized transition and non-transition from the conditional probabilities of being in encamped or travelling state, obtained from the fit of the HMM-SSF to plains bison trajectories. was set to the actual distance between bison and wolf (dwolf) when dwolf≤dthreshold and dthreshold, otherwise. https://doi.org/10.1371/journal.pone.0272538.s004 en_US
dc.description S1 Fig. Simulated heterogeneous landscape used in the multi-state biased correlated random walk simulations, from gaussian random field with an exponential covariance function with variance = 1, nugget = 0 and a set of patch concentration (μQ) and patch size (γQ) resulting in three level of patchiness: 1) low (μQ = -1.5, γQ = 2), 2) intermediate (μQ = -0.5, γQ = 2) and 3) high (μQ = 1, γQ = 10). https://doi.org/10.1371/journal.pone.0272538.s005 en_US
dc.description S2 Fig. Distribution of distance to the closest waterhole according to the mode of movement estimated from the HMM-SSF for 18 zebras in Hwange National Park during the dry hot season. The conditional probabilities of being in each state, obtained from the fit of the HMM-SFF, were dichotomized to 0–1 based on a 0.5 threshold to determine the state of the individual at each step on its trajectory. https://doi.org/10.1371/journal.pone.0272538.s006 en_US
dc.description S3 Fig. Log-likelihood profile from mixed-effects generalized linear model with binomial distribution to predict probability of switching from encamped to travelling mode of movement, according to a gradient of threshold distance, dthreshold. https://doi.org/10.1371/journal.pone.0272538.s007 en_US
dc.description S4 Fig. Total number of switches from encamped to travelling mode of movement according to day time, estimated using conditional probabilities of being in each state, obtained from the fit of the HMM-SFF to plains bison trajectories followed during the summers 2005–2016. We then separated the day in four periods: Night: 22:00–02:00, Dawn: 03:00–06:00, Day: 07:00–15:00 and Dusk: 16:00–21:00. https://doi.org/10.1371/journal.pone.0272538.s008 en_US
dc.description.abstract Movement of organisms plays a fundamental role in the evolution and diversity of life. Animals typically move at an irregular pace over time and space, alternating among movement states. Understanding movement decisions and developing mechanistic models of animal distribution dynamics can thus be contingent to adequate discrimination of behavioral phases. Existing methods to disentangle movement states typically require a follow-up analysis to identify state-dependent drivers of animal movement, which overlooks statistical uncertainty that comes with the state delineation process. Here, we developed populationlevel, multi-state step selection functions (HMM-SSF) that can identify simultaneously the different behavioral bouts and the specific underlying behavior-habitat relationship. Using simulated data and relocation data from mule deer (Odocoileus hemionus), plains bison (Bison bison bison) and plains zebra (Equus quagga), we illustrated the HMM-SSF robustness, versatility, and predictive ability for animals involved in distinct behavioral processes: foraging, migrating and avoiding a nearby predator. Individuals displayed different habitat selection pattern during the encamped and the travelling phase. Some landscape attributes switched from being selected to avoided, depending on the movement phase. We further showed that HMM-SSF can detect multi-modes of movement triggered by predators, with prey switching to the travelling phase when predators are in close vicinity. HMM-SSFs thus can be used to gain a mechanistic understanding of how animals use their environment in relation to the complex interplay between their needs to move, their knowledge of the environment and navigation capacity, their motion capacity and the external factors related to landscape heterogeneity. en_US
dc.description.department Mammal Research Institute en_US
dc.description.department Zoology and Entomology en_US
dc.description.librarian dm2022 en_US
dc.description.uri http://www.plosone.org en_US
dc.identifier.citation Prima, M.-C., Duchesne, T., Merkle, J.A., Chamaillé-Jammes, S. & Fortin, D. (2022) Multi-mode movement decisions across widely ranging behavioral processes. PLoS One 17(8): e0272538. https://doi.org/10.1371/journal.pone.0272538. en_US
dc.identifier.issn 1932-6203 (online)
dc.identifier.other 10.1371/journal.pone.0272538
dc.identifier.uri https://repository.up.ac.za/handle/2263/88164
dc.language.iso en en_US
dc.publisher Public Library of Science en_US
dc.rights This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. en_US
dc.subject Bison en_US
dc.subject Animal migration en_US
dc.subject Wolves en_US
dc.subject Deer en_US
dc.subject Random walk en_US
dc.subject Zebras en_US
dc.subject Animal behavior en_US
dc.subject Mules en_US
dc.title Multi-mode movement decisions across widely ranging behavioral processes en_US
dc.type Article en_US


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