Genomic breeding for diameter growth and tolerance to Leptocybe gall wasp and Botryosphaeria/Teratosphaeria fungal disease complex in Eucalyptus grandis

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dc.contributor.author Mphahlele, M.M. (Makobatjatji)
dc.contributor.author Isik, Fikret
dc.contributor.author Hodge, Gary R.
dc.contributor.author Myburg, Alexander Andrew
dc.date.accessioned 2021-04-09T15:25:20Z
dc.date.available 2021-04-09T15:25:20Z
dc.date.issued 2021-02
dc.description Supplementary Figure 1. Trait distribution plots of the trial sites. The top row is the diameter growth histogram plot, the middle row is the histogram plot for Lepto incidence scores, and the bottom row is the BotryoTera incidence scores. The last column is the combined distribution of the measured traits across the three sites. en_ZA
dc.description Supplementary Figure 2. Frequency plots across the representative pedigree linked and unrelated generations. The top row is the diameter growth histogram plot, the middle row is the histogram plot for Lepto incidence scores, and the bottom row is the BotryoTera incidence scores. en_ZA
dc.description Supplementary Table 1. Environmental and trial design information of the study population. The number of families and their pedigree generations are indicated with the phenotyped and genotyped individuals. en_ZA
dc.description Table_1_Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalypt.XLSX en_ZA
dc.description Table_2_Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalypt.XLSX en_ZA
dc.description Table_3_Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalypt.XLSX en_ZA
dc.description Table_4_Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalypt.csv en_ZA
dc.description.abstract Eucalyptus grandis is one of the most important species for hardwood plantation forestry around the world. At present, its commercial deployment is in decline because of pests and pathogens such as Leptocybe invasa gall wasp (Lepto), and often co-occurring fungal stem diseases such as Botryosphaeria dothidea and Teratosphaeria zuluensis (BotryoTera). This study analyzed Lepto, BotryoTera, and stem diameter growth in an E. grandis multi-environmental, genetic trial. The study was established in three subtropical environments. Diameter growth and BotryoTera incidence scores were assessed on 3,334 trees, and Lepto incidence was assessed on 4,463 trees from 95 half-sib families. Using the Eucalyptus EUChip60K SNP chip, a subset of 964 trees from 93 half-sib families were genotyped with 14,347 informative SNP markers. We employed single-step genomic BLUP (ssGBLUP) to estimate genetic parameters in the genetic trial. Diameter and Lepto tolerance showed a positive genetic correlation (0.78), while BotryoTera tolerance had a negative genetic correlation with diameter growth (−0.38). The expected genetic gains for diameter growth and Lepto and BotryoTera tolerance were 12.4, 10, and −3.4%, respectively. We propose a genomic selection breeding strategy for E. grandis that addresses some of the present population structure problems. en_ZA
dc.description.department Biochemistry en_ZA
dc.description.department Forestry and Agricultural Biotechnology Institute (FABI) en_ZA
dc.description.department Genetics en_ZA
dc.description.department Microbiology and Plant Pathology en_ZA
dc.description.librarian hj2021 en_ZA
dc.description.sponsorship The National Research Foundation (NRF) Bioinformatics and Functional Genomics Program (BFG), the Technology and Human Resources for Industry Program (THRIP) and Mondi South Africa. en_ZA
dc.description.uri http://www.frontiersin.org/Plant_Science en_ZA
dc.identifier.citation Mphahlele MM, Isik F, Hodge GR and Myburg AA (2021) Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalyptus grandis. Frontiers in Plant Science 12:638969. doi: 10.3389/fpls.2021.638969. en_ZA
dc.identifier.issn 1664-462X (online)
dc.identifier.other 10.3389/fpls.2021.638969
dc.identifier.uri http://hdl.handle.net/2263/79377
dc.language.iso en en_ZA
dc.publisher Frontiers Media en_ZA
dc.rights © 2020 Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). en_ZA
dc.subject Eucalyptus grandis en_ZA
dc.subject Hardwood en_ZA
dc.subject Plantation forestry en_ZA
dc.subject Gall wasps en_ZA
dc.subject Blue gum chalcid wasp (Leptocybe invasa) en_ZA
dc.subject Fungal stem disease en_ZA
dc.subject Botryosphaeria dothidea en_ZA
dc.subject Teratosphaeria zuluensis en_ZA
dc.title Genomic breeding for diameter growth and tolerance to Leptocybe gall wasp and Botryosphaeria/Teratosphaeria fungal disease complex in Eucalyptus grandis en_ZA
dc.type Article en_ZA


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