dc.contributor.author |
Viljoen, Johan W.
|
|
dc.contributor.author |
De Villiers, J Pieter.
|
|
dc.contributor.author |
Van Zyl, Augustinus J.
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|
dc.contributor.author |
Mezzavilla, Massimo.
|
|
dc.contributor.author |
Pepper, Michael Sean
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|
dc.date.accessioned |
2020-08-28T11:16:56Z |
|
dc.date.available |
2020-08-28T11:16:56Z |
|
dc.date.issued |
2019-07 |
|
dc.description.abstract |
Analytical and statistical stochastic approaches are used to model the dispersion of monogenic variants through large populations. These approaches are used to quantify the magnitude of the selective advantage of a monogenic heterozygous variant in the presence of a homozygous disadvantage. Dunbar’s results regarding the cognitive upper limit of the number of stable social relationships that humans can maintain are used to determine a realistic effective community size from which an individual can select mates. By envisaging human community structure as a network where social proximity rather than physical geography predominates, a significant simplification is achieved, implicitly accounting for the effects of migration and consanguinity, and with population structure and genetic drift becoming emergent features of the model. Effective community size has a dramatic effect on the probability of establishing beneficial alleles. It also affects the eventual equilibrium values that are reached in the case of variants conferring a heterozygous selective advantage, but a homozygous disadvantage, as in the case of cystic fibrosis and sickle cell disease. The magnitude of this selective advantage can then be estimated based on observed occurrence levels of a specific allele in a population, without requiring prior information regarding its phenotypic manifestation. |
en_ZA |
dc.description.department |
Electrical, Electronic and Computer Engineering |
en_ZA |
dc.description.department |
Immunology |
en_ZA |
dc.description.department |
Mathematics and Applied Mathematics |
en_ZA |
dc.description.librarian |
pm2020 |
en_ZA |
dc.description.uri |
http://www.nature.com/srep/index.html |
en_ZA |
dc.identifier.citation |
Viljoen, J.W., De Villiers, J.P., Van Zyl, A.J. et al. 2019,'Establishment and equilibrium levels of deleterious mutations in large populations', Scientific Reports, vol. 9, no. 1, art. 10384, pp. 1-10. |
en_ZA |
dc.identifier.issn |
2045-2322 (online) |
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dc.identifier.other |
10.1038/s41598-019-46803-7 |
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dc.identifier.uri |
http://hdl.handle.net/2263/75951 |
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dc.language.iso |
en |
en_ZA |
dc.publisher |
Nature Research |
en_ZA |
dc.rights |
© The Author(s) 2019. This article is licensed under a Creative Commons Attribution 4.0 International License. |
en_ZA |
dc.subject |
Computational models |
en_ZA |
dc.subject |
Experimental models of disease |
en_ZA |
dc.title |
Establishment and equilibrium levels of deleterious mutations in large populations |
en_ZA |
dc.type |
Article |
en_ZA |