dc.contributor.author |
Van der Nest, Magrieta Aletta
|
|
dc.contributor.author |
Steenkamp, Emma Theodora
|
|
dc.contributor.author |
De Vos, Lieschen
|
|
dc.contributor.author |
Wienk, Raven
|
|
dc.contributor.author |
Swart, Velushka
|
|
dc.contributor.author |
Van den Berg, Noelani
|
|
dc.date.accessioned |
2025-02-17T11:54:29Z |
|
dc.date.available |
2025-02-17T11:54:29Z |
|
dc.date.issued |
2024 |
|
dc.description |
DATA AVAILABILITY STATEMENT : The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at https://www.ncbi.nlm.nih.gov/. The associated BioProject, BioSample, Genbank, and SRA numbers are PRJNA884201, SAMN31015769, PP377641 and SRR28283158. |
en_US |
dc.description.abstract |
The mitochondrial genome of Dematophora necatrix is 121,350 base pairs in length with a GþC content
of 30.19%. Phylogenetic analysis showed that D. necatrix grouped with other members of the
Xylariaceae, with which its mitogenome also shares a broadly similar architecture and gene content.
The D. necatrix mitogenome contains 14 protein-coding and 26 tRNA-encoding genes, as well as one
copy each of the rnl, rns, rps3 and nat1 genes. However, as much as 80% of this genome is intronic or
non-coding. This is likely due to expansions and rearrangements caused by the large number of group
I introns and the homing endonucleases and reverse-transcriptases they encode. Our study thus provides
a valuable foundation from which to explore the mitochondrion’s role in the biology of D. necatrix,
and also serves as a resource for investigating the pathogen’s population biology and general
ecology. |
en_US |
dc.description.department |
Biochemistry, Genetics and Microbiology (BGM) |
en_US |
dc.description.department |
Forestry and Agricultural Biotechnology Institute (FABI) |
en_US |
dc.description.librarian |
am2024 |
en_US |
dc.description.sdg |
SDG-15:Life on land |
en_US |
dc.description.sponsorship |
The Hans Merensky Foundation. |
en_US |
dc.description.uri |
https://www.tandfonline.com/loi/tmdn20 |
en_US |
dc.identifier.citation |
Van der Nest, M.A., Steenkamp, E.T., De Vos, L. et al. 2024, 'Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix
Xylariaceae: Xylariales)', Mitochondrial DNA Part B
Resources, vol. 9, no. 9, 1207-1212. https://DOI.org/10.1080/23802359.2024.2403411. |
en_US |
dc.identifier.issn |
2380-2359 |
|
dc.identifier.other |
10.1080/23802359.2024.2403411 |
|
dc.identifier.uri |
http://hdl.handle.net/2263/100988 |
|
dc.language.iso |
en |
en_US |
dc.publisher |
Taylor and Francis Group |
en_US |
dc.rights |
© 2024 The Author(s).
This is an Open Access article distributed under the terms of the Creative Commons Attribution License. |
en_US |
dc.subject |
tRNA gene clusters |
en_US |
dc.subject |
Homing endonucleases |
en_US |
dc.subject |
Nacetyltransferase |
en_US |
dc.subject |
Xylariaceae |
en_US |
dc.subject |
SDG-15: Life on land |
en_US |
dc.title |
Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales) |
en_US |
dc.type |
Article |
en_US |