Otolith shape analysis as a tool for species identification and management of cryptic congeners in the northern Benguela ocean warming hotspot

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dc.contributor.author Wilhelm, M.R.
dc.contributor.author Jagger, C.E.
dc.contributor.author Nghipangelwa, N.M.
dc.contributor.author Pringle, B.A.
dc.contributor.author Shaw, P.W.
dc.contributor.author Potts, W.M.
dc.contributor.author Henriques, Romina
dc.contributor.author McKeown, N.J.
dc.date.accessioned 2025-01-20T12:20:09Z
dc.date.issued 2025-01
dc.description DATA AVAILABILITY : A link to all data is included in the manuscript. en_US
dc.description.abstract Adaptive management is critical to maintaining resilient fisheries in our rapidly changing ocean environments. However, establishing appropriate and cost-effective monitoring programmes that adequately capture the responses of fisheries to climate change have been elusive. The coastal waters of central and northern Namibia are a global hotspot of ocean warming, with several responses by fish impacting its coastal fisheries. One documented change is a poleward distributional shift of the west coast dusky kob, Argyrosomus coronus into Namibia, where it has begun to hybridize with the congeneric A. inodorus. With considerably different life histories, it is critical that managers can differentiate between these species and the hybrids to appropriately manage the most important recreational and commercial linefish species (bycatch and biomass) in Namibia. In this paper, we used otolith shape analysis, Linear Discriminant Analyses (LDA) to show that otolith shape can be used to distinguish between species and their putative hybrids, identified based on mitochondrial DNA and nuclear microsatellite data. A total of 342 individuals from northern and central Namibia (northern Benguela) between 18.5 and 22.7°S were genetically identified, with a subsample of 217 paired with otolith shape analysis. Otolith shape analyses with LDA and leave-one-out cross validation showed successful species identification at 96.3 % accuracy, and improved accuracy of hybrid identification compared to using body morphology by 50 %. The Fourier descriptors provided excellent classification accuracy for separating A. coronus from A. inodorus (and putative hybrids, but poorer classification accuracy for separating the hybrids from A. inodorus (4/8). We thus recommend using otolith shape analysis for distinguishing the two species but suggest that genetic identification is still required to monitor hybridization. Monitoring for adaptive management should therefore include routine otolith collection and species classification to improve stock assessment and promote the development of appropriate management strategies for this important fishery in the northern Benguela. en_US
dc.description.department Biochemistry, Genetics and Microbiology (BGM) en_US
dc.description.embargo 2025-12-30
dc.description.librarian hj2024 en_US
dc.description.sdg SDG-14:Life below water en_US
dc.description.sponsorship The Ministry of Fisheries and Marine Resources, Namibia; Department of Fisheries and Ocean Sciences, University of Namibia; the Department of Ichthyology and Fisheries Sciences, Rhodes University, South Africa; the Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, UK; the Marine Genomics Group, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, South Africa; UKRI Global Challenges Research Fund One Ocean Hub - flexible fund and Wild Skeleton Coast Adventure Tours. en_US
dc.description.uri http://www.elsevier.com/locate/fishres en_US
dc.identifier.citation Wilhelm, M.R., Jagger, C.E., Nghipangelwa, N.M. et al. 2025, 'Otolith shape analysis as a tool for species identification and management of cryptic congeners in the northern Benguela ocean warming hotspot, Fisheries Research, vol. 281, art. 107262, pp. 1-11. doi : 10.1016/j.fishres.2024.107262. en_US
dc.identifier.issn 0165-7836 (print)
dc.identifier.issn 1872-6763 (online)
dc.identifier.other 10.1016/j.fishres.2024.107262
dc.identifier.uri http://hdl.handle.net/2263/100194
dc.language.iso en en_US
dc.publisher Elsevier en_US
dc.rights Crown Copyright © 2024 Published by Elsevier B.V. All rights are reserved, including those for text and data mining, AI training, and similar technologies. Notice : this is the author’s version of a work that was accepted for publication in Fisheries Research. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. A definitive version was subsequently published in Fisheries Research, vol. 281, art. 107262, pp. 1-11. doi : 10.1016/j.fishres.2024.107262. en_US
dc.subject Otolith shape en_US
dc.subject Elliptic Fourier analysis en_US
dc.subject Linear discriminant analysis en_US
dc.subject Hybridization en_US
dc.subject Line fishery management en_US
dc.subject SDG-14: Life below water en_US
dc.title Otolith shape analysis as a tool for species identification and management of cryptic congeners in the northern Benguela ocean warming hotspot en_US
dc.type Postprint Article en_US


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