dc.contributor.author |
Cukrowski, Ignacy
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dc.contributor.author |
Govender, Krishna Kuben
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dc.date.accessioned |
2011-03-14T06:45:11Z |
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dc.date.available |
2011-03-14T06:45:11Z |
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dc.date.issued |
2010-02 |
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dc.description.abstract |
An explicit application of isodesmic reaction (a proton exchange between the studied and structurally similar reference molecule), where the free energy change of the protonation reaction in water was obtained using the free energies in solution from a single continuum model, was used to predict stepwise protonation constants of nitrilotriacetic acid. Calculations were performed at the RB3LYP/6-311+G(d,p) level of theory in conjunction with the PCM-UA0 solvation model. Five reference molecules were investigated. It has been established that
one must pay special attention to structural similarities between the studied and reference molecules and selection of a protonated form of the reference molecule. The protonation reactions in which the studied and reference molecule are involved in must be (if possible) of the same order; e.g., the first (or generally nth)
protonation reaction of the reference molecule must be used to compute the first (or nth) protonation constant of the studied molecule. The lowest energy conformer must always be used. The first, second, third, and fourth computed protonation constants differed, on average, from experimental values by 3.3, 0.8, 0.2, and 0.2 log units, respectively. It appears that the charge on the reference molecule has more decisive influence on the accuracy of computed protonation constants than its structural differences when compared with the studied molecule. Results reported can be used as a guide in constructing isodesmic reactions useful for the theoretical prediction of protonation constants by use of methodology described in this work. |
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dc.description.sponsorship |
Financial support of the National Research Foundation of South Africa and the University of Pretoria is highly appreciated. |
en_US |
dc.identifier.citation |
Govender, KK & Cukrowski, I 2010, 'Density functional theory and isodesmic reaction based prediction of four stepwise protonation constants, as log KH(n), for nitrilotriacetic acid. The importance of a kind and protonated form of a reference molecule used', Journal of Physical Chemistry A, vol. 114, no. 4, pp. 1868-1878. [http://pubs.acs.org/journal/jpcafh] |
en |
dc.identifier.issn |
1089-5639 |
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dc.identifier.other |
10.1021/jp9092964 |
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dc.identifier.uri |
http://hdl.handle.net/2263/16041 |
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dc.language.iso |
en |
en_US |
dc.publisher |
American Chemical Society |
en_US |
dc.rights |
© 2010 American Chemical Society. This document is the Accepted Manuscript version of a Published Work that appeared in final form in Journal of Physical Chemistry A, copyright © American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see http://pubs.acs.org/journal/jpcafh. |
en_US |
dc.subject |
DFT |
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dc.subject |
Isodesmic reaction |
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dc.subject |
PCM |
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dc.subject |
Protonation constant |
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dc.subject |
Dissociation constant |
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dc.subject |
NTA |
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dc.subject |
IDA |
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dc.subject |
MIDA |
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dc.subject |
EIDA |
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dc.subject |
PIDA |
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dc.subject |
HIDA |
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dc.subject.lcsh |
Thermodynamic cycles |
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dc.subject.lcsh |
Proton transfer reactions |
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dc.subject.lcsh |
Density functionals |
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dc.subject.lcsh |
Nitrilotriacetic acid |
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dc.title |
Density functional theory and isodesmic reaction based prediction of four stepwise protonation constants, as log KH(n), for nitrilotriacetic acid. The importance of a kind and protonated form of a reference molecule used |
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dc.type |
Postprint Article |
en |