A class-wide phylogenetic assessment of Dothideomycetes

Schoch, C.L.; Crous, Pedro W.; Groenewald, Johannes Zacharias; Boehm, E.W.A.; Burgess, Treena I.; De Gruyter, J.; De Hoog, G. Sybren; Dixon, L.J.; Grube, M.; Gueidan, C.; Harada, Y.; Hatakeyama, S.; Hirayama, K.; Hosoya, T.; Huhndorf, S.M.; Hyde, Kevin D.; Jones, E.B.G.; Kohlmeyer, J.; Kruys, A.; Li, Y.M.; Lucking, R.; Lumbsch, H. Thorsten; Marvanova, L.; Mbatchou, J.S.; McVay, A.H.; Miller, A.N.; Mugambi, G.K.; Muggia, L.; Nelsen, M.P.; Nelson, P.; Owensby, C.A.; Phillips, A.J.L.; Phongpaichit, S.; Pointing, Stephen B.; Pujade-Renaud, V.; Raja, H.A.; Rivas Plata, E.; Robbertse, Barbara; Ruibal, C.; Sakayaroj, J.; Sano, T.; Selbmann, L.; Shearer, C.A.; Shirouzu, T.; Slippers, Bernard; Suetrong, S.; Tanaka, K.; Volkmannkohlmeyer, B.; Wingfield, Michael J.; Wood, A.R.; Woudenberg, J.H.C.; Yonezawa, H.; Zhang, Yong; Spatafora, J.W.

dc.contributor.author	Schoch, C.L.
dc.contributor.author	Crous, Pedro W.
dc.contributor.author	Groenewald, Johannes Zacharias
dc.contributor.author	Boehm, E.W.A.
dc.contributor.author	Burgess, Treena I.
dc.contributor.author	De Gruyter, J.
dc.contributor.author	De Hoog, G. Sybren
dc.contributor.author	Dixon, L.J.
dc.contributor.author	Grube, M.
dc.contributor.author	Gueidan, C.
dc.contributor.author	Harada, Y.
dc.contributor.author	Hatakeyama, S.
dc.contributor.author	Hirayama, K.
dc.contributor.author	Hosoya, T.
dc.contributor.author	Huhndorf, S.M.
dc.contributor.author	Hyde, Kevin D.
dc.contributor.author	Jones, E.B.G.
dc.contributor.author	Kohlmeyer, J.
dc.contributor.author	Kruys, A.
dc.contributor.author	Li, Y.M.
dc.contributor.author	Lucking, R.
dc.contributor.author	Lumbsch, H. Thorsten
dc.contributor.author	Marvanova, L.
dc.contributor.author	Mbatchou, J.S.
dc.contributor.author	McVay, A.H.
dc.contributor.author	Miller, A.N.
dc.contributor.author	Mugambi, G.K.
dc.contributor.author	Muggia, L.
dc.contributor.author	Nelsen, M.P.
dc.contributor.author	Nelson, P.
dc.contributor.author	Owensby, C.A.
dc.contributor.author	Phillips, A.J.L.
dc.contributor.author	Phongpaichit, S.
dc.contributor.author	Pointing, Stephen B.
dc.contributor.author	Pujade-Renaud, V.
dc.contributor.author	Raja, H.A.
dc.contributor.author	Rivas Plata, E.
dc.contributor.author	Robbertse, Barbara
dc.contributor.author	Ruibal, C.
dc.contributor.author	Sakayaroj, J.
dc.contributor.author	Sano, T.
dc.contributor.author	Selbmann, L.
dc.contributor.author	Shearer, C.A.
dc.contributor.author	Shirouzu, T.
dc.contributor.author	Slippers, Bernard
dc.contributor.author	Suetrong, S.
dc.contributor.author	Tanaka, K.
dc.contributor.author	Volkmannkohlmeyer, B.
dc.contributor.author	Wingfield, Michael J.
dc.contributor.author	Wood, A.R.
dc.contributor.author	Woudenberg, J.H.C.
dc.contributor.author	Yonezawa, H.
dc.contributor.author	Zhang, Yong
dc.contributor.author	Spatafora, J.W.
dc.date.accessioned	2010-04-06T07:08:22Z
dc.date.available	2010-04-06T07:08:22Z
dc.date.issued	2009
dc.description.abstract	We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.	en
dc.identifier.citation	Schoch, CL, Crous, PW, Groenewald, JZ, Boehm, EWA, Burgess, TI, De Gruyter, J, De Hoog, GS, Dixon, LJ, Grube, M, Gueidan, C, Harada, Y, Hatakeyama, S, Hirayama, K, Hosoya, T, Huhndorf, SM, Hyde, KD, Jones, EBG, Kohlmeyer, J, Kruys, A, Li, YM, Lucking, R, Lumbsch, HT, Marvanova, L, Mbatchou, JS, McVay, AH, Miller, AN, Mugambi, GK, Muggia, L, Nelsen, MP, Nelson, P, Owensby, CA, Phillips, AJL, Phongpaichit, S, Pointing, SB, Pujade-Renaud, V, Raja, HA, Rivas Plata, E, Robbertse, B, Ruibal, C, Sakayaroj, J, Sano, T, Selbmann, L, Shearer, CA, Shirouzu, T, Slippers, B, Suetrong, S, Tanaka, K, Volkmannkohlmeyer, B, Wingfield, MJ, Wood, AR, Woudenberg, JHC, Yonezawa, H, Zhang, Y & Spatafora, JW 2009, 'A class-wide phylogenetic assessment of Dothideomycetes', Studies in Mycology, vol. 64, pp. 1-15. [http://www.studiesinmycology.org]	en
dc.identifier.issn	0166-0616
dc.identifier.other	10.3114/sim.2009.64.01
dc.identifier.uri	http://hdl.handle.net/2263/13787
dc.language.iso	en	en
dc.publisher	Cbs Publications / Centraalbureau voor Schimmelcultures	en
dc.rights	Copyright 2009 CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights.	en
dc.subject	Dothideomyceta	en
dc.subject	Plant pathogens	en
dc.subject.lcsh	Fungi -- Phylogeny	en
dc.subject.lcsh	Ascomycetes -- Phylogeny	en
dc.subject.lcsh	Lichens	en
dc.title	A class-wide phylogenetic assessment of Dothideomycetes	en
dc.type	Article	en